Training & Documents

From BioImagingUKWiki

(Difference between revisions)
Jump to: navigation, search
(Documents)
(Electron Microscopy Documents)
 
(33 intermediate revisions not shown)
Line 1: Line 1:
= Sample preparation =
= Sample preparation =
-
== Documents ==
+
== Light Microscopy Documents ==
*[http://www.bioimaginguk.org/images/a/a3/Glass.pdf Localisation Microscopy (STORM/PALM) Coverglass Guide] (745 kB)
*[http://www.bioimaginguk.org/images/a/a3/Glass.pdf Localisation Microscopy (STORM/PALM) Coverglass Guide] (745 kB)
*[http://www.bioimaginguk.org/images/5/5c/Localisation_Microscopy_Immunolabelling.pdf Localisation Microscopy (STORM/GSDIM) Immunolabelling Guide] (532 kB)
*[http://www.bioimaginguk.org/images/5/5c/Localisation_Microscopy_Immunolabelling.pdf Localisation Microscopy (STORM/GSDIM) Immunolabelling Guide] (532 kB)
-
== Movies ==
+
== Light Microscopy Movies ==
Please upload sample preparation movies here
Please upload sample preparation movies here
 +
 +
*[http://www.jove.com/video/50579/test-samples-for-optimizing-storm-super-resolution-microscopy Test Samples for Optimizing STORM Super-Resolution Microscopy]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/ibiology-microscopy-short-course/fluorescent-proteins-2.html Fluorescent proteins]
 +
 +
== Electron Microscopy Documents ==
 +
Please upload sample preparation protocols here
 +
 +
'''3View (Serial Block Face SEM)'''
 +
 +
== Electron Microscopy Movies ==
 +
Please upload sample preparation movies here
 +
= Microscope usage =
= Microscope usage =
-
== Documents ==
+
== Light Microscopy Documents ==
Please upload microscope usage protocols here
Please upload microscope usage protocols here
Line 26: Line 38:
*[http://www.bioimaginguk.org/images/6/69/Zeiss_axiovert200m_volocity.pdf Zeiss Axiovert 200M with Simple PCI Software Quickstart Guide] (400 kB)
*[http://www.bioimaginguk.org/images/6/69/Zeiss_axiovert200m_volocity.pdf Zeiss Axiovert 200M with Simple PCI Software Quickstart Guide] (400 kB)
-
== Movies ==
+
== Light Microscopy Movies ==
Please upload microscope usage movies here
Please upload microscope usage movies here
 +
*[http://www.nikoninstruments.com/en_GB/Learn-Explore/Video-Tutorials Ti Live Cell System Setup]
-
= Microscopy maintenance =
+
== Electron Microscopy Documents ==
 +
Please upload microscope usage protocols here
-
== Documents ==
+
'''3View (Serial Block Face SEM)'''
 +
 
 +
== Electron Microscopy Movies ==
 +
Please upload microscope usage movies here
 +
 
 +
= Microscope maintenance =
 +
 
 +
== Light Microscopy Documents ==
Please upload microscope maintenance protocols here
Please upload microscope maintenance protocols here
-
== Movies ==
+
== Light Microscopy Movies ==
*[http://www.youtube.com/watch?v=2Y0u6rg_fjM Home built PALM/STORM microscope]
*[http://www.youtube.com/watch?v=2Y0u6rg_fjM Home built PALM/STORM microscope]
*[http://www.youtube.com/watch?v=6tLd_J7uh_Q 3D PALM/STORM with astigmatism]
*[http://www.youtube.com/watch?v=6tLd_J7uh_Q 3D PALM/STORM with astigmatism]
*[http://www.youtube.com/watch?v=nmwrSBkevE4 Custom laser control]
*[http://www.youtube.com/watch?v=nmwrSBkevE4 Custom laser control]
 +
*[http://www.nikoninstruments.com/en_GB/Learn-Explore/Video-Tutorials Maintenance videos including Cleaning Microscope Optics & Bulb Replacement]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/finding-dirt-in-your-optical-system.html Finding dirt in your optical system]
 +
 +
== Electron Microscopy Documents ==
 +
Please upload microscope maintenance protocols here
 +
 +
'''3View (Serial Block Face SEM)'''
 +
 +
== Electron Microscopy Movies ==
 +
Please upload microscope maintenance movies here
= General microscopy =
= General microscopy =
-
== Documents ==
+
== Light Microscopy Documents ==
* [http://www.bioimaginguk.org/images/d/d4/Good_imaging_practice.pdf Good Imaging Practice Overview] (343 kB)
* [http://www.bioimaginguk.org/images/d/d4/Good_imaging_practice.pdf Good Imaging Practice Overview] (343 kB)
* [http://www.bioimaginguk.org/images/b/bb/Correlative_super_resolution_using_dSTORM_and_SIM.pdf Comparison of SIM and STORM results] (963 kB)
* [http://www.bioimaginguk.org/images/b/bb/Correlative_super_resolution_using_dSTORM_and_SIM.pdf Comparison of SIM and STORM results] (963 kB)
-
== Movies ==
+
== Light Microscopy Movies ==
Please upload general microscopy movies here
Please upload general microscopy movies here
-
== Journal of Visualized Experiments Microscopy Videos (Open Access) ==
+
*[http://www.ibiology.org/ibioeducation/taking-courses/eyepieces.html Eyepieces]
-
*[http://www.jove.com/video/3747/lateral-diffusion-exocytosis-membrane-proteins-cultured-neurons Lateral Diffusion and Exocytosis of Membrane Proteins in Cultured Neurons Assessed using Fluorescence Recovery and Fluorescence-loss Photobleaching]
+
*[http://www.ibiology.org/ibioeducation/taking-courses/objectives-and-eyepieces.html Objectives and eyepieces]
-
*[http://www.jove.com/video/2925/fluorescence-lifetime-imaging-of-molecular-rotors-in-living-cells Fluorescence Lifetime Imaging of Molecular Rotors in Living Cells]
+
*[http://www.ibiology.org/ibioeducation/taking-courses/features-of-an-objective.html Features of an objective lens]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/phase-polarization-and-dic-microscopy-lab.html Phase, Polarization & DIC Microscopy]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/ibiology-microscopy-short-course/dark-field-phase-contrast-polarization-and-differential-interference-contrast-dic-microscopy.html Dark Field, Phase Contrast, Polarisation and DIC]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/polarized-light-and-its-interaction-with-material.html Polarized Light and its Interaction with Material]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/correcting-for-spherical-aberration-with-a-correction-collar.html Correcting for spherical aberration]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/demystifying-microscopes-disassembling-a-nikon-ti-eclipse.html Demystifying microscopes - disassembling a Nikon Ti Eclipse]
 +
 
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/ibiology-microscopy-short-course/lenses-and-image-formation.html Lenses and image formation]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/ibiology-microscopy-short-course/what-can-you-learn-with-a-light-microscope-2.html What you can learn with a light microscope]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/ibiology-microscopy-short-course/choosing-the-right-microscopy-technique.html Choosing the right microscopy technique]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/summary-designing-a-fluorescence-microscopy-experiment.html Designing a fluorescence microscopy experiment]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/introduction-to-fluorescence-microscopy.html Introduction to Fluorescence Microscopy]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/deconvolution-microscopy.html Deconvolution]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/ibiology-microscopy-short-course/resolution-in-microscopy.html Resolution in microscopy]
 +
 
 +
== Light Microscopy Advanced Techniques & Methods ==
 +
 
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/fourier-space.html Fourier Space (Image formation)]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/high-throughput-microscopy.html Hight throughput microscopy]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/deconvolution-microscopy.html Deconvolution]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/optogenetics.html Optogenetics]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/optical-sectioning-and-confocal-microscopy.html Optical sectioning and confocal microscopy]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/total-internal-reflection-fluorescence-tirf-microscopy.html TIRF]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/two-photon-microscopy.html Two photon microscopy]
 +
 
 +
'''F Words'''
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/forster-resonance-energy-transfer-fret-microscopy.html FRET]
*[http://www.jove.com/video/2149/imaging-protein-protein-interactions-in-vivo Imaging protein-protein interactions in-vivo (FRET)]
*[http://www.jove.com/video/2149/imaging-protein-protein-interactions-in-vivo Imaging protein-protein interactions in-vivo (FRET)]
 +
*[http://www.jove.com/video/2925/fluorescence-lifetime-imaging-of-molecular-rotors-in-living-cells Fluorescence Lifetime Imaging of Molecular Rotors in Living Cells]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/fluorescence-lifetime-imaging-microscopy.html FLIM]
*[http://www.jove.com/video/1876/fluorescent-labeling-cos-7-expressing-snap-tag-fusion-proteins-for Fluorescent Labeling of COS-7 Expressing SNAP-tag Fusion Proteins for Live Cell Imaging]
*[http://www.jove.com/video/1876/fluorescent-labeling-cos-7-expressing-snap-tag-fusion-proteins-for Fluorescent Labeling of COS-7 Expressing SNAP-tag Fusion Proteins for Live Cell Imaging]
 +
*[http://www.jove.com/video/3747/lateral-diffusion-exocytosis-membrane-proteins-cultured-neurons Lateral Diffusion and Exocytosis of Membrane Proteins in Cultured Neurons Assessed using Fluorescence Recovery and Fluorescence-loss Photobleaching]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/ibiology-microscopy-short-course/measuring-dynamics-photobleaching-and-photoactivation-2.html FRAP and Photoactivation]
 +
 +
'''Super-Resolution Microscopy'''
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/ibiology-microscopy-short-course/super-resolution-microscopy.html Super-Resolution Microscopy]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/super-resolution-overview-and-stimulated-emission-depletion-sted-microscopy.html Super-resolution microscopy: STED]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/super-resolution-localization-microscopy.html Super-Resolution Microscopy: Localisation Microscopy]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/super-resolution-structured-illumination-microscopy-sim.html Super-Resolution Microscopy: SIM]
 +
*[http://www.jove.com/video/50579/test-samples-for-optimizing-storm-super-resolution-microscopy Test Samples for Optimizing STORM Super-Resolution Microscopy]
 +
 +
'''Light Sheet / SPIM'''
 +
*[http://openspim.org/Welcome_to_the_OpenSPIM_Wiki OpenSPIM]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/ibiology-microscopy-course/dual-view-inverted-selective-plane-illumination-dispim.html Dual view SPIM (DISPIM)]
 +
*[http://www.ibiology.org/ibioeducation/taking-courses/light-sheet-sectioning.html Light Sheet/SPIM]
 +
 +
== Electron Microscopy Documents ==
 +
Please upload general microscopy protocols here
 +
 +
'''3View (Serial Block Face SEM)'''
 +
 +
== Electron Microscopy Movies ==
 +
Please upload general microscopy movies here
= Software =
= Software =
Line 60: Line 141:
*[http://icy.bioimageanalysis.org Icy: an open community platform for bioimage informatics]
*[http://icy.bioimageanalysis.org Icy: an open community platform for bioimage informatics]
-
*[http://wiki.laser.ceb.cam.ac.uk/wiki/index.php/Resources rainSTORM software for localisation microscopy]
 
*[http://code.google.com/p/quickpalm/ QuickPALM software for localisation microscopy]
*[http://code.google.com/p/quickpalm/ QuickPALM software for localisation microscopy]
 +
*[http://wiki.laser.ceb.cam.ac.uk/wiki/index.php/Resources rainSTORM software for localisation microscopy]
*[http://www.bioimaginguk.org/index.php/File:RainSTORM_user_guide.pdf rainSTORM user guide] (1.31 MB)
*[http://www.bioimaginguk.org/index.php/File:RainSTORM_user_guide.pdf rainSTORM user guide] (1.31 MB)

Current revision as of 12:03, 31 March 2015

Contents

Sample preparation

Light Microscopy Documents

Light Microscopy Movies

Please upload sample preparation movies here

Electron Microscopy Documents

Please upload sample preparation protocols here

3View (Serial Block Face SEM)

Electron Microscopy Movies

Please upload sample preparation movies here


Microscope usage

Light Microscopy Documents

Please upload microscope usage protocols here

Confocal microscopes

Widefield microscopes

Light Microscopy Movies

Please upload microscope usage movies here

Electron Microscopy Documents

Please upload microscope usage protocols here

3View (Serial Block Face SEM)

Electron Microscopy Movies

Please upload microscope usage movies here

Microscope maintenance

Light Microscopy Documents

Please upload microscope maintenance protocols here

Light Microscopy Movies

Electron Microscopy Documents

Please upload microscope maintenance protocols here

3View (Serial Block Face SEM)

Electron Microscopy Movies

Please upload microscope maintenance movies here

General microscopy

Light Microscopy Documents

Light Microscopy Movies

Please upload general microscopy movies here

Light Microscopy Advanced Techniques & Methods

F Words

Super-Resolution Microscopy

Light Sheet / SPIM

Electron Microscopy Documents

Please upload general microscopy protocols here

3View (Serial Block Face SEM)

Electron Microscopy Movies

Please upload general microscopy movies here

Software

Documents

Movies

Personal tools